Joint CMU-Pitt Ph.D. Program in Computational Biology
Current Topics in Computational Biology
(Journal Club)

CMU course number 02-701
Pitt course number MSCBIO/CMPBIO 2060

Spring 2013

  • Instructor: Seyoung Kim, Lane Center for Computational Biology, School of Computer Science, Carnegie Mellon University
  • Location: 1511 Hamburg Hall
  • Time: Wednesdays 12:30-1:20pm
  • DatePaperPresenterCritique
    1/23Gerstung et al, 2009, BioinformaticsTed RomanAJ Sedgewick
    1/30Ciriello et al, 2012, Genome ResAJ SedgewickTed Roman
    2/6Trott and Olson, 2010, J. Comput ChemLuong NguyenLaura Tipton
    2/13Abeel et al, 2010, BioinformaticsBarbara Sanchez-NeriLuong Nguyen
    2/20Loo, Wu & Alstchuler, 2007, Nature MethodsGregory JohnsonBarbara Sanchez-Neri
    2/27Dougherty and Shmulevich, 2012, Current Genomics
    and
    Dougherty, 2008, Current Genomics
    Rory DonovanGregory Johnson
    3/6Kelley et al, 2011, Nucleic Acids ResearchTim SongDavid Farrow
    3/13No Class, Spring Break
    3/20Heller and Ghahramani, 2005, ICML Santosh BhavaniLingxue Zhang
    3/27Li et al, 2012, BioinformaticsLaura TiptonKristina Buschur
    4/3Zhong et al, 2013, NatureKristina BuschurEricka Mochan
    4/10Smith et al, 2011, PLoS Comput BiolEricka MochanSanotsh Bhavani
    4/17Bedford, Rambaut & Pascual, 2012, BMC BiologyDavid FarrowTim Song
    4/24Mohan et al, 2012, NIPS

    Background Reading

    Lingxue ZhangRory Donovan
    5/1Paper Reviews