Seminar Series
Fridays at 11am.
Seminars hosted by Carnegie Mellon are in the Mellon Institute conference room
Seminars hosted by Pitt are in BST3 room 6014
| Date/Location | Speaker | Affiliation | homepage | Title of Talk | Host |
| Aug. 31, 2007 @ BST3 | Nir Friedman | Hebrew University | homepage | Natural history and evolutionary principles of gene duplication in fungi | Naftali Kaminski |
| Sep. 7, 2007 @ MI | Shlomo Ta'asan | Carnegie Mellon University | homepage | Mathematical modeling approaches for systems biology | |
| Sep. 17, 2007 @ MI | Pratul K. Agarwal | Oak Ridge National Laboratory | homepage | Enzymes: an integrated view of structure, dynamics and function | Maria Kurnikova |
| Sep. 21, 2007 @ BST3 | James Faeder | University of Pittsburgh | Rule-based modeling of signal-transduction systems | ||
| Sep. 28, 2007 @ BST3 | Adrian Elcock | University of Iowa | homepage | Molecular simulations of bacterial cytoplasm | Lillian Chong |
| Oct. 5, 2007 @ MI | Dmitri Chklovskii | HHMI - Janelia Farms | homepage | High-throughput reconstruction of brain circuits: How machine vision will revolutionize neuroscience | Justin Crowley |
| Oct. 12, 2007 @ MI | Ming Li | University of Waterloo | homepage | Modern homology search | Chris Langmead |
| Oct. 19, 2007 @ MI | Bud Mishra | New York University | homepage | SMASH: Single Molecule Approach to Sequencing by Hybridization | Chris Langmead |
| Oct. 26, 2007 @ MI | Uwe Ohler | Duke University | homepage | Motifs and patterns: Using sequence and image data to understand gene regulation in eukaryotes | Eric Xing |
| Nov. 2, 2007 @ MI | Olga Troyanskaya | Princeton University | homepage | Combining genomic data, computation, and experiments to discover novel biology | Eric Xing |
| Nov. 9, 2007 @ MI | Jeffrey Skolnick | Georgia Institute of Technology | homepage | Prediction of protein structure and function on a proteomic scale | Chris Langmead |
| Nov. 16, 2007 @ BST3 | Gary An | Northwestern University | homepage | Dynamic Knowledge Representation using Agent Based Modeling: A Multi-scale Modeling Architecture for Acute Inflammation | Yoram Vodovotz |
| Nov. 30, 2007 @ MI | Tom Mitchell | Carnegie Mellon University | homepage | Brains, Meaning and Corpus Statistics | |
| Dec. 7, 2007 | Gregory Voth | University of Utah | homepage | The Multiscale Challenge for Biomolecular Systems: A Systematic Approach | Hagai Meirovitch |
| Jan. 18, 2008 @ MI | Nancy Zhang | Stanford University | homepage | A multisample change-point model for DNA copy number analysis | Eric Xing |
| Jan. 25, 2008 @ MI | Olga Troyanskaya | Princeton University | homepage | Combining genomic data, computation, and experiments to discover novel biology | Eric Xing |
| Feb. 1, 2008 @ Mauldin Auditorium (NSH 1305) | Ivet Bahar | University of Pittsburgh | homepage | Supramolecular Machinery: Insights from Elastic Network Models | |
| Feb. 8, 2008 @ BST3 | Harmen Bussemaker | Columbia University | homepage | Data-driven biophysical modeling of (post-)transcriptional networks | James Faeder |
| Feb. 15, 2008 @ BST3 | Bruce Tidor | Massachusets Inst. of Technology | homepage | Electrostatics in ligand binding and design | Carlos Camacho |
| Feb. 22, 2008 @ BST3 | Takis Benos | University of Pittsburgh | homepage | What can evolution say about gene regulation? From DNA signals to gene networks | |
| Feb. 29, 2008 @ BST3 | Thomas E. Cheatham, III | University of Utah | homepage | Promise and peril in the simulation of nucleic acids and protein structure, dynamics and interactions | Carlos Camacho |
| Mar. 7, 2008 @ MI | Sridhar Hannenhalli | University of Pennsylvania | homepage | Computational analysis of eukaryotic transcriptional regulation and its evolution | Russell Schwartz |
| Mar. 21, 2008 @ MI | Mark Gerstein | Yale University | homepage | Human Genome Annotation | Eric Xing |
| Mar. 28, 2008 @ BST3 | Marcelo Magnasco | Rockefeller University | homepage | Sparse time-frequency representations and the neural coding of sound. | Bino John |
| Apr. 4, 2008 @ BST3 | Marti Head | GlaxoSmithKline | Structure-Based Design at GSK | Lillian Chong | |
| May 13, 2008 @ MI | Trey Ideker | University of California, San Diego | homepage | Mapping gene regulatory pathways by assembly of physical and genetic interactions | Ziv Bar-Joseph |

